The Elbe river can be traveled upstream from Dresden, Germany into the Czech Republic, where it becomes the Labe. The connecting Vltava waterway leads to Prague and further south.
The Bata Canal, in the eastern part of the country, is isolated but is becoming popular for cruising.

The EuroCanals Guide for the waterways of the Czech Republic is not currently available.

Links to waterway authorities and associations:

IWI - Inland Waterways International

National Waterway Authority

Bata Canal

Josef Blecha - Canalboating in the Czech Republic